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SARS CoV-2 Pseudoviruses

Tools for Measuring SARS-CoV-2 

SARS-CoV-2 Pseudovirus

Pseudo SARS-CoV-2 is safe to use with no risk of infection. These pseudoviruses are BSL-1 baculoviruses pseudotyped with Spike (S) proteins. This means that biologists and drug discovery teams can work on COVID-19 projects outside of BSL-3 facilities with standard safety procedures. Baculovirus production in Sf9 cells is cost effective with low batch-to-batch variability.

Once inside the cell, the pseudovirus does not replicate, but delivers a genetically-encoded, fluorescent reporter that expresses bright red or green fluorescence in the host cell nucleus. When Spike-ACE2 interaction is successfully blocked, the host cell fluorescence decreases.

Two versions of Pseudo SARS-CoV-2 are available. One carries the Spike protein originally sequenced from isolates obtained in Wuhan, the other carries D614G Spike (Korber et.al. 2020). Both constructs have been sequence verified and tested in A549 cells. Pseudovirus affinity for the host receptor ACE2 was confirmed using absorption experiments on A549 cells expressing different amounts of ACE2. Further validation in other cell types is ongoing. 

As SARS-CoV-2 evolves, researchers are working to understand how Spike mutations affect transmission and their potential effect on the efficacy of blocking antibodies. 2nd generation pseudoviruses for SARS-CoV-2 variants with K417N, E484K, and N501Y mutations are in development.

 

Viral Entry in Primary Human Endothelial Cells

Assay measures SARS-CoV-2 spike protein / ACE2 receptor dependent entry into endothelial cells. HUVECs were transduced with ACE2 receptor, then infected with baculovirus pseudotyped with SARS-CoV-2 spike protein. Pretreatment with the known entry inhibitor, lactoferrin, (Mirabelli et al., 2020) showed dose-dependent inhibition.

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Pseudovirus Absorption Assay

A549 cells in a 96-well plate received increasing amounts of red fluorescent ACE2, or a red fluorescent protein control.  The following day, Pseudo SARS-CoV-2 pseudovirus was added to the plate and incubated for 2 hours. The media from the plate was transferred to a second plate of fresh A549 cells expressing a constant amount of ACE2.  Twenty-four hours later, the cells were washed with PBS and the green fluorescence produced by the pseudovirus from the media was measured on a BioTek Synergy™ plate reader.  The two hour incubation on ACE2 expressing cells clearly reduces the pseudovirus concentration in an ACE2 dependent manner.

Blocking Pseudovirus

Pseudo SARS-CoV-2 is an enveloped virus that presents the full length spike protein on the viral surface membrane with the same topology as SARS-CoV-2. The spike protein is oriented perpendicular to the membrane such that multiple antibody binding sites are available and presented in a structurally relevant way.  Two versions are available, one with the sequence identified in the original Wuhan reference specimen and the newer D614G mutant that first appeared in Europe and is rapidly replacing the Wuhan strain.

 

SARS-CoV-2 pseudovirus is blocked by anti-Spike antibody. A549 cells were transduced with 6.6 x 10 8 VG/mL Fluorescent ACE2 (#C1100R). The following day, cells were treated with a monoclonal anti-Spike antibody (Acro Biosystems, catalog # SAD-S35) or an equivalent amount of IgG isotype control, then challenged with 3.3 x 10 8 VG/mL SARS-CoV-2 pseudovirus (#C1110G). Green fluorescence was quantified ~20 hours later. 

Simple Protocol Steps

Korber, Bette, Will M. Fischer, Sandrasegaram Gnanakaran, Hyejin Yoon, James Theiler, Werner Abfalterer, Nick Hengartner, et al. 2020. “Tracking Changes in SARS-CoV-2 Spike: Evidence That D614G Increases Infectivity of the COVID-19 Virus.” Cell, July. https://doi.org/10.1016/j.cell.2020.06.043.

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